miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|73881640|gb|DT484378.1|DT484378 TTTTTTTTTTTTTTTTTTAAAAAAAAAGTTTCAAATCAAACAAGAAAGAATTATACAGCAAGTTGAACGATCCAAAAGCC
TCACTGACCAAACAATTAACACCAAATGCAAAAGAATAAAGTAGGTGTTGTAGATTAATTTTAAACTACATGGGCTCCTT
CCATGGTGCTCCATAACTCAGAACACTCTTCTTCCTCTTCTTTATTTTTCCCTCTGGGAGACAAGAATCCGAATGCTGAA
CTTGGAGCCTGCATGAGGTCCAAAGTCACATGCGTGCTGGTGTCGTTTAACCGGCCCCAATTGTGTGGCTCGGACAGCAC
TTGTTGCTGATGGGTTATAAGAAAATTGGAGCTAGGTTGGGACTCACCAAGGTCTTCCATGGCATGGTGGTGCAAGTGTT
TTTCAAGAACAAGCTGTCTAGCTAGGATGGCTGTGCGGTGTTCTGCAATCAATTCACGTAGTGCGGCACTTGATCTTGAG
GAGAGATCAGAAGGAGAAACCCAGGAATCAGCTTTGGATGACAGAAGAGAGAGAGCACATCCTGTCGGCGACGCTATGTA
TGGAAATCTCCCAGCCATCAATTTTTCTTGAGAGGAATTCCTTGAAACAGGATCCTGAGAGCTCTTTCTTCTTCTTTCAT
TGTGCCCTGCCAATCTCCTCCTACAACTCCTCTTTGCATCATCAAACTCTGACACTACATGAAACCTGCTACACTGCTGA
CAGAACCGCTGCTCCAAACCTAGAACAATTACTTTAGGAGCCTTGGAGTGCATCTCACAAACTTTATGCCTCCTGTGATA
ATCTTTAGCATTCAACAACGCCACATGGCACCCCTCCACCTGACACCTCGGCACATTCACTGACGTGGA




Most similar to sp|Q7XT42|SPL7_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7XT42|SPL7_ORYSJ Squamosa promoter-binding-like protein 7
           OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2
          Length = 360

 Score =  176 bits (445), Expect = 2e-43
 Identities = 119/257 (46%), Positives = 149/257 (57%), Gaps = 20/257 (7%)
 Frame = -1

Query: 854 VPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVIVLGLEQRFCQQCSRFHVVSEFDDA 675
           VPRCQVEGC + L   K+YHRRHKVCE+H+KAP+V+V G EQRFCQQCSRFHV++EFDDA
Sbjct: 105 VPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDA 164

Query: 674 KRSCRRRLAGHNERRRKS-SQDPVSRNSSQE---KLMAGRFPYIASPTGC--ALSLLSS- 516
           K+SCRRRLAGHNERRR+S + + ++R S+      ++   FP    PT    ALSLLSS 
Sbjct: 165 KKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSLLSSA 224

Query: 515 --KADXXXXXXXXXXXXSAALRELIAEHRTAILARQLVLEKHLHHHAMEDLGESQPS--S 348
                            SAAL ELIAE+R A+L+ Q   ++     A    G S  S  +
Sbjct: 225 RATGPWLMPTPDISARSSAALDELIAENRAALLSWQFFSDRQ-PPPAGRPTGRSPGSETA 283

Query: 347 NFLITHQQQVLSEPHNWGRLNDTSTHVTLDLMQAPSSAFGFLSP------RGKNKXXXXE 186
                H Q     P   G+  + S HVTLDLMQA ++A G  +P      R   +     
Sbjct: 284 GGWHAHLQARPPPPGAGGQHENQSGHVTLDLMQATTAAGGSGAPFRPVPARPPKEGGDAG 343

Query: 185 C-SELW--STMEGAHVV 144
           C S+ W  S MEGA VV
Sbjct: 344 CTSDAWTPSPMEGARVV 360